Blar i NTNU Open på forfatter "Čiampor, Fedor"
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DNA barcode reference libraries for the monitoring of aquatic biota in Europe: Gap-analysis and recommendations for future work
Weigand, Hannah; Beermann, Arne J.; Čiampor, Fedor; Costa, Filipe O.; Csabai, Zoltán; Duarte, Sofia; Geiger, Matthias F.; Grabowski, Michał; Rimet, Frédéric; Rulik, Björn; Strand, Malin; Szucsich, Nicholaus; Weigand, Alexander M.; Willassen, Endre; Wyler, Sofia A.; Bouchez, Agnès; Borja, Ángel; Čiamporová-Zaťovičová, Zuzana; Ferreira, Sónia; Dijkstra, Klaas-Douwe B.; Eisendle, Ursula; Freyhof, Jörg; Gadawski, Piotr; Graf, Wolfram; Haegerbaeumer, Arne; van der Hoorn, Berry B.; Japoshvili, Bella; Keresztes, Lujza; Keskin, Emre; Leese, Florian; Macher, Jan N.; Mamos, Tomasz; Paz, Guy; Pešić, Vladimir; Pfannkuchen, Daniela Maric; Pfannkuchen, Martin Andreas; Price, Benjamin W.; Rinkevich, Buki; Teixeira, Marcos A.L.; Várbíró, Gábor; Ekrem, Torbjørn (Journal article; Peer reviewed, 2019)Effective identification of species using short DNA fragments (DNA barcoding and DNA metabarcoding) requires reliable sequence reference libraries of known taxa. Both taxonomically comprehensive coverage and content quality ... -
The era of reference genomes in conservation genomics
Formenti, Giulio; Theissinger, Kathrin; Fernandes, Carlos; Bista, Iliana; Bombarely, Aureliano; Bleidorn, Christoph; Ciofi, Claudio; Crottini, Angelica; Godoy, José A.; Höglund, Jacob; Malukiewicz, Joanna; Mouton, Alice; Oomen, Rebekah Alice; Paez, Sadye; Palsbøll, Per J.; Pampoulie, Christophe; Ruiz-López, María J.; Svardal, Hannes; Theofanopoulou, Constantina; de Vries, Jantina; Waldvogel, Ann-Marie; Zhang, Guojie; Mazzoni, Camila J.; Jarvis, Erich D.; Bálint, Miklós; Čiampor, Fedor; Aghayan, Sargis A.; Alioto, Tyler S.; Almudí, Isabel; Alvarez, Nadir; Alves, Paulo C.; Amorim, Isabel R.; Antunes, Agostinho; Arribas, Paula; Baldrian, Petr; Berg, Paul Ragnar; Bertorelle, Giorgio; Böhne, Astrid; Bonisoli-Alquati, Andrea; Boštjančić, Ljudevit L.; Boussau, Bastien; Breton, Catherine M.; Buzan, Elena; Campos, Paula F.; Carreras, Carlos; Castro, L. Filipe; Chueca, Luis J.; Conti, Elena; Cook-Deegan, Robert; Croll, Daniel; Cunha, Mónica V.; Delsuc, Frédéric; Dennis, Alice B.; Dimitrov, Dimitar; Gilbert, Marcus Thomas Pius; Heintzman, Peter D.; Jakobsen, Kjetill Sigurd; Jentoft, Sissel; Matschiner, Michael (Peer reviewed; Journal article, 2022)Progress in genome sequencing now enables the large-scale generation of reference genomes. Various international initiatives aim to generate reference genomes representing global biodiversity. These genomes provide unique ... -
Metadata standards and practical guidelines for specimen and DNA curation when building barcode reference libraries for aquatic life
Rimet, Frédéric; Aylagas, Eva; Borja, Angel; Bouchez, Agnès; Canino, Alexis; Chauvin, Christian; Chonova, Teofana; Čiampor, Fedor; Costa, Filipe O.; Ferrari, Benoit J. D.; Gastineau, Romain; Goulon, Chloe; Gugger, Murièl; Holzmann, Maria; Jahn, Regine; Kahlert, Maria; Kusber, Wolf-Hennig; Laplace-Treyture, Christophe; Leese, Florian; Leliaert, Frederik; Mann, David G.; Marchand, Frédérik; Méléder, Vona; Pawlowski, Jan; Rasconi, Serena; Revera, Sinziana; Rougerie, Rodolphe; Schweizer, Magali; Trobajo, Rosa; Vasselon, Valentin; Vivien, Régis; Weigand, Alexander M.; Witkowski, Andrzej; Zimmermann, Jonas; Ekrem, Torbjørn (Peer reviewed; Journal article, 2021)DNA barcoding and metabarcoding is increasingly used to effectively and precisely assess and monitor biodiversity in aquatic ecosystems. As these methods rely on data availability and quality of barcode reference libraries, ... -
An urban Blitz with a twist: rapid biodiversity assessment using aquatic environmental DNA
Hupało, Kamil; Majaneva, Markus; Czachur, Molly Victoria; Sire, Lucas; Marquina, Daniel; Lijtmaer, Darío A.; Ivanov, Vladislav; Leidenberger, Sonja; Čiampor, Fedor; Čiamporová-Zat'ovičová, Zuzana; Mendes, Izabela S.; Desiderato, Andrea; Topstad, Lasse; Meganck, Danial Hariz Z. A.; Kjærstad, Gaute; Lin, Xiaolong; Price, Benjamin; Stevens, Mark; Ekrem, Torbjørn; Deiner, Kristy (Peer reviewed; Journal article, 2020)As global biodiversity declines, there is an increasing need to create an educated and engaged society. Having people of all ages participate in measuring biodiversity where they live helps to create awareness. Recently, ...